PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0270s0240.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 227aa    MW: 24908.9 Da    PI: 9.6156
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0270s0240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-18105155255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++AeIrd +    + +r++lg+f tae Aa a+++a+ +++g
  SapurV1A.0270s0240.1.p 105 HYRGVRRRP-WGKYAAEIRDSTR---HgARIWLGTFETAEAAALAYDRAAFNMRG 155
                             8********.**********422...25*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.0E-31104164IPR001471AP2/ERF domain
CDDcd000183.29E-20104164No hitNo description
PROSITE profilePS5103223.499105163IPR001471AP2/ERF domain
PfamPF008479.6E-14105155IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23105165IPR016177DNA-binding domain
SMARTSM003801.1E-35105169IPR001471AP2/ERF domain
PRINTSPR003678.4E-11106117IPR001471AP2/ERF domain
PRINTSPR003678.4E-11129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MTCDNPFSAC NIIIERYLSG ANSSIPRAYK FKPNPFQSDK QAMVLTSQSN ELPFNENDSQ  60
DMVIYQMINE AGAANSSSTY NILPRSQTNT PIMLQPARTV IAKKHYRGVR RRPWGKYAAE  120
IRDSTRHGAR IWLGTFETAE AAALAYDRAA FNMRGSKALL NFPAEVLAAI STQNLQPILS  180
SARSRKKEMD SSRGSSCTVT LAASQSESES STSGESRHRG SDILES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-31104166163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377448.11e-101hypothetical protein POPTR_0011s06010g
SwissprotO046811e-50PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLU5FVW81e-101U5FVW8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s05100.15e-91(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93393042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-31ethylene response factor 1